The logo (in the header) is messed up on the index page and missing on others, although it used to be there - what do I do? the site is fortymilegold.ca

The missing images are from the geometry folder. The usual reason for this is that you failed to upload the new images.

How are you doing the publish? If you are publishing to disk first then using a separate FTP to do the upload, you should have the missing images in your local publish folder. So it should just be a matter of uploading the missing ones.

If you are using SiteSpinner to publish directly to your site, did you see any error messages when you published?